Publication Manager
Contents
About Publication Manager Plug-in
The Information Retrieval plug-in is divided into two main components:
- Publication searching in PubMed, supporting search using a combination of keywords and specific fields. The result is a set of publication that contains information about title, abstract, journal.
- These publications are organized in queries and Publication Retrieval tries to get the PDF file for a Publication indexed by its PMID.
There is a limitation for crawling that is limited to articles with free access only, but this option can be changed depending on the organization’s rights. The is also a system for classification of publications within a query given its relevance. This plugin was developed in collaboration with the [SING ]group at University of Vigo - Spain.
User HowTOs
MVC AIBench Model:
Data-types:
PublicationManager: Plug-in Main Data-type that contains information about all PubMed search already done. Contain information about proxy and database given by configuration file and directory for publications PDF files.
QueryInformationRetrievalExtension: Represent a Query. Contain information about database ID, date, keywords, organism, matching publications, available abstracts and other generic query properties.
Operations:
AddFileToPublicationManagerOperation: Manually add a PDFfile for publication.
AddPublicationToQueryOperation: Add a new publication to QueryInformationRetrievalExtension.
ExitOperation: Publication Manager exit operation.
InitReferenceManager: Initialize PublicationManager plug-in.
JournalRetrivalListDocs: Operation that given a list PMID try gets PDF files.
PubmedSearchOperation: Operation for Search in PubMed given the query details.
SelectRelevance: Change document relevance for query.
UpdateQueryOperation: Update QueryInformationRetrievalExtension (updates the result of PubMed search in time).
Views:
PublicationManagerView: PublicationManager View that contains a visualizer off all queries presents in Publication Manager and permits have some filters.
QueryRelevanceView: QueryInformationRetrievalExtension View that permits viewing documents in a query whit your relevance.
QueryView: QueryInformationRetrievalExtension View that permits viewing documents in a query an permits some search steps.
