Difference between revisions of "Publication Manager"
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== About Publication Manager Plug-in == | == About Publication Manager Plug-in == | ||
| + | The Information Retrieval plug-in is divided into two main components: | ||
| + | *Publication searching in PubMed, supporting search using a combination of keywords and specific fields. The result is a set of publication that contains information about title, abstract, journal. | ||
| + | *These publications are organized in queries and Publication Retrieval tries to get the PDF file for a Publication indexed by its PMID. | ||
| + | There is a limitation for crawling that is limited to articles with free access only, but this option can be changed depending on the organization’s rights. The is also a system for classification of publications within a query given its relevance. | ||
| + | This plug-in was developed in collaboration with the [[http://sing.ei.uvigo.es/ SING ]]group at University of Vigo - Spain. | ||
| − | + | == User HowTOs == | |
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| − | + | [[Publication Manager View]] | |
[[Change Relevance Document]] | [[Change Relevance Document]] | ||
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[[Query Add Publication]] | [[Query Add Publication]] | ||
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| + | [[Query View]] | ||
[[Query Relevance View]] | [[Query Relevance View]] | ||
[[Query Update]] | [[Query Update]] | ||
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| + | [[Query Remove]] | ||
== MVC AIBench Model: == | == MVC AIBench Model: == | ||
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=== '''''Data-types:''''' === | === '''''Data-types:''''' === | ||
| − | '''''PublicationManager''''': | + | '''''PublicationManager''''': main data-type of the plug-in that contains information about all PubMed searches already executed. Contains information about proxy and database given by configuration file and directory for PDF files. |
| − | '''''QueryInformationRetrievalExtension''''': | + | '''''QueryInformationRetrievalExtension''''':represents a Query. Contains information about database ID, date, keywords, organism, matching publications, available abstracts and other generic query properties. |
=== '''''Operations:''''' === | === '''''Operations:''''' === | ||
| − | '''''AddFileToPublicationManagerOperation''''': Manually | + | '''''AddFileToPublicationManagerOperation''''': Manually adds a PDFfile for a publication. |
| − | '''''AddPublicationToQueryOperation''''': | + | '''''AddPublicationToQueryOperation''''': Adds a new publication to a ''QueryInformationRetrievalExtension''. |
'''''ExitOperation''''': Publication Manager exit operation. | '''''ExitOperation''''': Publication Manager exit operation. | ||
| − | '''''InitReferenceManager''''': Initialize PublicationManager plug-in. | + | '''''InitReferenceManager''''': Initialize ''PublicationManager'' plug-in. |
| − | '''''JournalRetrivalListDocs''''': Operation that given a list | + | '''''JournalRetrivalListDocs''''': Operation that given a list of PMIDs tries to get PDF files. |
| − | '''''PubmedSearchOperation''''': Operation for | + | '''''PubmedSearchOperation''''': Operation for searching in PubMed, given the query details. |
'''''SelectRelevance''''': Change document relevance for query. | '''''SelectRelevance''''': Change document relevance for query. | ||
| − | '''''UpdateQueryOperation''''': Update QueryInformationRetrievalExtension (updates the result of PubMed search in time). | + | '''''UpdateQueryOperation''''': Update ''QueryInformationRetrievalExtension'' (updates the result of PubMed search in time). |
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| + | '''''LoadPublicationManagerStatus:''''' Load Publication Manager Session. | ||
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| + | '''''SavePublicationManagerStatus:''''' Save Publication Manager Session. | ||
=== '''''Views:''''' === | === '''''Views:''''' === | ||
| − | '''''PublicationManagerView''''': PublicationManager View that contains a visualizer | + | '''''PublicationManagerView''''': PublicationManager View that contains a visualizer of all queries present in the Publication Manager and allows applying some filters. |
| − | '''''QueryRelevanceView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query | + | '''''QueryRelevanceView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query including relevance. |
| − | '''''QueryView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query | + | '''''QueryView''''': QueryInformationRetrievalExtension View View that permits viewing documents in a query and permits some search steps. |
Latest revision as of 09:56, 21 June 2012
Contents
About Publication Manager Plug-in
The Information Retrieval plug-in is divided into two main components:
- Publication searching in PubMed, supporting search using a combination of keywords and specific fields. The result is a set of publication that contains information about title, abstract, journal.
- These publications are organized in queries and Publication Retrieval tries to get the PDF file for a Publication indexed by its PMID.
There is a limitation for crawling that is limited to articles with free access only, but this option can be changed depending on the organization’s rights. The is also a system for classification of publications within a query given its relevance. This plug-in was developed in collaboration with the [SING ]group at University of Vigo - Spain.
User HowTOs
MVC AIBench Model:
Data-types:
PublicationManager: main data-type of the plug-in that contains information about all PubMed searches already executed. Contains information about proxy and database given by configuration file and directory for PDF files.
QueryInformationRetrievalExtension:represents a Query. Contains information about database ID, date, keywords, organism, matching publications, available abstracts and other generic query properties.
Operations:
AddFileToPublicationManagerOperation: Manually adds a PDFfile for a publication.
AddPublicationToQueryOperation: Adds a new publication to a QueryInformationRetrievalExtension.
ExitOperation: Publication Manager exit operation.
InitReferenceManager: Initialize PublicationManager plug-in.
JournalRetrivalListDocs: Operation that given a list of PMIDs tries to get PDF files.
PubmedSearchOperation: Operation for searching in PubMed, given the query details.
SelectRelevance: Change document relevance for query.
UpdateQueryOperation: Update QueryInformationRetrievalExtension (updates the result of PubMed search in time).
LoadPublicationManagerStatus: Load Publication Manager Session.
SavePublicationManagerStatus: Save Publication Manager Session.
Views:
PublicationManagerView: PublicationManager View that contains a visualizer of all queries present in the Publication Manager and allows applying some filters.
QueryRelevanceView: QueryInformationRetrievalExtension View that permits viewing documents in a query including relevance.
QueryView: QueryInformationRetrievalExtension View View that permits viewing documents in a query and permits some search steps.
