Difference between revisions of "Dictionary Update"
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After [[Dictionary_Create| Create Dictionary]] you can update dictionary terms for some database flat-files or internal Biowarehouse database. | After [[Dictionary_Create| Create Dictionary]] you can update dictionary terms for some database flat-files or internal Biowarehouse database. | ||
| + | This operation allows the user to add contents to a dictionary, which can come from several sources. | ||
== Load Dictionary to Clipboard: == | == Load Dictionary to Clipboard: == | ||
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== Flat Files Supported: == | == Flat Files Supported: == | ||
| − | + | Currently, the system supports the following sources: | |
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| − | + | *'''BioWarehouse''' integrated databases (http://biowarehouse.ai.sri.com/); | |
| − | + | *'''BioCyc''' flatfile(http://biocyc.org/download.shtml) ; | |
| − | + | *'''ChEBI''' flatfiles (http://www.ebi.ac.uk/chebi/downloadsForward.do); | |
| − | + | *'''NCBI Taxnonomy''' flatfiles (ftp://ftp.ncbi.nih.gov/pub/taxonomy/); | |
| − | + | *'''UniProtKB/Swiss-Prot''' flatfiles (http://www.uniprot.org/downloads); | |
| − | + | *'''MGI Entrez Genes''' flatfiles (ftp://ftp.informatics.jax.org/pub/reports/index.html). | |
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| − | * BioCyc | ||
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Revision as of 10:47, 5 January 2012
After Create Dictionary you can update dictionary terms for some database flat-files or internal Biowarehouse database. This operation allows the user to add contents to a dictionary, which can come from several sources.
Load Dictionary to Clipboard:
For have access to dictionary operations, first you have to load dictionary data-type to clipboard by selected dictionary bottom ( red circle ). Now in clipboard are available dictionary data-type (red arrow).
Update Dictionary:
For update dictionary content press left mouse bottom on Dictionary data-type (image up).
After appears Dictionary Update GUI and can select:
- Database Flat Files type (see Flat Files Supported ).
- Entity Selected
- Flat File (Select files to access data)
- Organism - Some Flat File options than could select organism for entity selection
Flat Files Supported:
Currently, the system supports the following sources:
- BioWarehouse integrated databases (http://biowarehouse.ai.sri.com/);
- BioCyc flatfile(http://biocyc.org/download.shtml) ;
- ChEBI flatfiles (http://www.ebi.ac.uk/chebi/downloadsForward.do);
- NCBI Taxnonomy flatfiles (ftp://ftp.ncbi.nih.gov/pub/taxonomy/);
- UniProtKB/Swiss-Prot flatfiles (http://www.uniprot.org/downloads);
- MGI Entrez Genes flatfiles (ftp://ftp.informatics.jax.org/pub/reports/index.html).
