Workflow report

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General Report Information

The General Report Information contains an overview of the workflow results including the total processing time and tasks performed.


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Pubmed Search Report

The Pubmed Search Report contains information about publications Retrieved like "Keywords", "organism", number of document retrieved and processing time.


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Crawling Report

The Crawling Report Contains information about the crawling process including:

  • Downloaded Documents
  • Previously downloaded
  • Not Downloaded,
  • Restricted Download
  • Processing time


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Corpus Creation Report

The Corpus Creation Report contains information about the Corpus created during a workflow execution:

  • Number of Documents that form Corpus;
  • Corpus Name,
  • Corpus Type
  • Processing Time


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NER Report

The NER Report contains information about the NER Process. This report is divided into general statistics:

  • Number of entities extracted
  • Processing Time

and a tabbed panel with details about the set of entities extracted (All Entities, Entities Grouped by class and Entities Grouped by Article)


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Export to CSV File

In this report, it is also possible export to NER results to a CSV File using the export to CSV button. Check NERProcess Export to CSV for more details

RE Report

The RE Report contains information about the RE Process:

  • Number of entities
  • Number of Relations Extracted
  • Processing Time
  • All Relations Extracted


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Export to CSV File

In this report is also possible export RE results to a CSV File using the export to CSV button. Check: REProcess Export to CSV File for more details

Export to XGMML File

It is also possible to export RE results to a graph in the XGMML format using the export to XGMML button. Check REProcess_Export_To_XGMML_File for more details