Workflow : Information Retrieval and Extraction Basic

Operation

The basic workflow for Information Retrieval and Extraction allows you to set up some tasks in @Note, including the Journal Retrieval, Corpus creation, NER and RE Processes with a minimal set of configuration steps.

To run the workflow, you must select the option Workflow -> Information Retrieval and Extraction Basic on the Menu Bar.

Step 1: Pubmed Search

in the first panel, you can select a basic query or an advanced query to submit to Pubmed Search.

Basic search

In the Basic search tab, you can only select keywords and organism.

Advanced Search

In Advanced search, you can restrict the search to a specific organism or keywords and can also select the name of an author, a journal, the type of article, if the article is present in PubMed Central or Medline, if full text is available or select a publication date range.

Step 2: Dictionaries Selection

In the next panel, select dictionaries, dictionaries can be added to the set that will be used in the NER process. When all dictionaries are selected, press Next.

Step 3: Class(es) Selection

In the next panel, for all dictionaries previously selected you can filter for classes. Pressing Next, the Workflow is started.

Processing

As the process proceeds you can check the progress status looking at the bar.

Workflow Report

As a result of the process, a Workflow_report is shown.