Difference between revisions of "What´s new"
From Anote2Wiki
Anote2Wiki (talk | contribs) |
Anote2Wiki (talk | contribs) m (Anote2Wiki moved page What new to What´s new) |
||
| (10 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
'''General:''' | '''General:''' | ||
| + | *Run Text miming workflows | ||
| + | |||
*Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms; | *Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms; | ||
| − | + | *MySql or H2 embedded database are used to store all relevant information (including annotations); data model extended and re-organized to provide the core of the application; | |
| + | |||
| + | *Organization in a set of plug-ins taking advantage of AI Bench plug-in system; improves modularity; makes easier adding new functionality and alternatives for different processes; | ||
| + | |||
| + | *Code was re-organized using Java interfaces for all relevant concepts and processes, making easier the integration of third party applications; MVC notions from AI Bench are better used to provide organized GUIs; core plug-ins define basic data structures and the interface of basic processes; | ||
| + | |||
| + | *Indication of progress in time consuming processes. | ||
| − | + | *Statistics and reports for all operation and datatypes | |
| − | + | *Settings configuration system | |
| − | + | *Update System | |
| − | + | '''Publication Manager''' | |
| − | + | *Add Patent document and Patent search | |
| − | + | *Add Springer search | |
| − | + | *PDF Retrieval from multiple sources | |
| − | + | *Query Update | |
| − | + | *Query Management system; larger number of options available | |
| + | *Possibility of including external publications manually | ||
| + | *Publication Labeling and notes | ||
| − | Resources | + | '''Resources Manager''' |
| − | + | *Better lexical resources management(dictionaries, lookup tables, etc) | |
| − | + | *Add Ontologies, rules ageneral lexical words (Stop Words) | |
| − | + | *More loaders and an interface allowing the easy implementation of new loaders | |
| − | + | '''Corpora''' | |
| − | + | *Notion of corpus/ corpora added to @Note | |
| − | + | *Allows creating corpus from the publication manager | |
| − | + | *Allows creating corpus from PDF list | |
| − | + | *Information extraction processes are-organized over corpora | |
| + | *Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1). | ||
| + | *Manual curation of Relations | ||
| − | NER | + | '''NER''' |
| − | + | *Add and adapt Linnaeus Tagger algorithm | |
| − | + | *Add ABNER and Chenistry tagger (From Gate8) | |
| + | *External NERs can be added with an easier interface | ||
| − | |||
| − | |||
| − | |||
| + | '''Relation''' | ||
| + | * Add RE algorithms | ||
| + | *Supports RE over corpora annotated by any NER Process | ||
| + | *Relation Extraction based in Natural Language processing | ||
| + | *Relation Co-occurrence | ||
| + | *Kinetic RE | ||
| − | + | '''Workflow''' | |
| − | + | *Run Biomedical Text Mining workflows | |
| − | |||
Latest revision as of 14:26, 5 July 2017
Short list of what's new in @ Note2
Summary of features - Anote2 vs Anote
General:
- Run Text miming workflows
- Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms;
- MySql or H2 embedded database are used to store all relevant information (including annotations); data model extended and re-organized to provide the core of the application;
- Organization in a set of plug-ins taking advantage of AI Bench plug-in system; improves modularity; makes easier adding new functionality and alternatives for different processes;
- Code was re-organized using Java interfaces for all relevant concepts and processes, making easier the integration of third party applications; MVC notions from AI Bench are better used to provide organized GUIs; core plug-ins define basic data structures and the interface of basic processes;
- Indication of progress in time consuming processes.
- Statistics and reports for all operation and datatypes
- Settings configuration system
- Update System
Publication Manager
- Add Patent document and Patent search
- Add Springer search
- PDF Retrieval from multiple sources
- Query Update
- Query Management system; larger number of options available
- Possibility of including external publications manually
- Publication Labeling and notes
Resources Manager
- Better lexical resources management(dictionaries, lookup tables, etc)
- Add Ontologies, rules ageneral lexical words (Stop Words)
- More loaders and an interface allowing the easy implementation of new loaders
Corpora
- Notion of corpus/ corpora added to @Note
- Allows creating corpus from the publication manager
- Allows creating corpus from PDF list
- Information extraction processes are-organized over corpora
- Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1).
- Manual curation of Relations
NER
- Add and adapt Linnaeus Tagger algorithm
- Add ABNER and Chenistry tagger (From Gate8)
- External NERs can be added with an easier interface
Relation
- Add RE algorithms
- Supports RE over corpora annotated by any NER Process
- Relation Extraction based in Natural Language processing
- Relation Co-occurrence
- Kinetic RE
Workflow
- Run Biomedical Text Mining workflows
