Difference between revisions of "What´s new"
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'''General:''' | '''General:''' | ||
− | + | *Run Text miming workflows | |
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− | + | *Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms; | |
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− | + | *MySql or H2 embedded database are used to store all relevant information (including annotations); data model extended and re-organized to provide the core of the application; | |
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− | |||
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− | + | *Organization in a set of plug-ins taking advantage of AI Bench plug-in system; improves modularity; makes easier adding new functionality and alternatives for different processes; | |
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− | |||
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− | + | *Code was re-organized using Java interfaces for all relevant concepts and processes, making easier the integration of third party applications; MVC notions from AI Bench are better used to provide organized GUIs; core plug-ins define basic data structures and the interface of basic processes; | |
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− | + | *Indication of progress in time consuming processes. | |
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− | |||
+ | *Statistics and reports for all operation and datatypes | ||
− | + | *Settings configuration system | |
− | + | ||
− | + | *Update System | |
+ | |||
+ | '''Publication Manager''' | ||
+ | *Add Patent document and Patent search | ||
+ | *Add Springer search | ||
+ | *PDF Retrieval from multiple sources | ||
+ | *Query Update | ||
+ | *Query Management system; larger number of options available | ||
+ | *Possibility of including external publications manually | ||
+ | *Publication Labeling and notes | ||
+ | |||
+ | '''Resources Manager''' | ||
+ | *Better lexical resources management(dictionaries, lookup tables, etc) | ||
+ | *Add Ontologies, rules ageneral lexical words (Stop Words) | ||
+ | *More loaders and an interface allowing the easy implementation of new loaders | ||
+ | |||
+ | '''Corpora''' | ||
+ | *Notion of corpus/ corpora added to @Note | ||
+ | *Allows creating corpus from the publication manager | ||
+ | *Allows creating corpus from PDF list | ||
+ | *Information extraction processes are-organized over corpora | ||
+ | *Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1). | ||
+ | *Manual curation of Relations | ||
+ | |||
+ | '''NER''' | ||
+ | *Add and adapt Linnaeus Tagger algorithm | ||
+ | *Add ABNER and Chenistry tagger (From Gate8) | ||
+ | *External NERs can be added with an easier interface | ||
+ | |||
+ | |||
+ | '''Relation''' | ||
+ | * Add RE algorithms | ||
+ | *Supports RE over corpora annotated by any NER Process | ||
+ | *Relation Extraction based in Natural Language processing | ||
+ | *Relation Co-occurrence | ||
+ | *Kinetic RE | ||
+ | |||
+ | '''Workflow''' | ||
+ | *Run Biomedical Text Mining workflows |
Latest revision as of 14:26, 5 July 2017
Short list of what's new in @ Note2
Summary of features - Anote2 vs Anote
General:
- Run Text miming workflows
- Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms;
- MySql or H2 embedded database are used to store all relevant information (including annotations); data model extended and re-organized to provide the core of the application;
- Organization in a set of plug-ins taking advantage of AI Bench plug-in system; improves modularity; makes easier adding new functionality and alternatives for different processes;
- Code was re-organized using Java interfaces for all relevant concepts and processes, making easier the integration of third party applications; MVC notions from AI Bench are better used to provide organized GUIs; core plug-ins define basic data structures and the interface of basic processes;
- Indication of progress in time consuming processes.
- Statistics and reports for all operation and datatypes
- Settings configuration system
- Update System
Publication Manager
- Add Patent document and Patent search
- Add Springer search
- PDF Retrieval from multiple sources
- Query Update
- Query Management system; larger number of options available
- Possibility of including external publications manually
- Publication Labeling and notes
Resources Manager
- Better lexical resources management(dictionaries, lookup tables, etc)
- Add Ontologies, rules ageneral lexical words (Stop Words)
- More loaders and an interface allowing the easy implementation of new loaders
Corpora
- Notion of corpus/ corpora added to @Note
- Allows creating corpus from the publication manager
- Allows creating corpus from PDF list
- Information extraction processes are-organized over corpora
- Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1).
- Manual curation of Relations
NER
- Add and adapt Linnaeus Tagger algorithm
- Add ABNER and Chenistry tagger (From Gate8)
- External NERs can be added with an easier interface
Relation
- Add RE algorithms
- Supports RE over corpora annotated by any NER Process
- Relation Extraction based in Natural Language processing
- Relation Co-occurrence
- Kinetic RE
Workflow
- Run Biomedical Text Mining workflows