Difference between revisions of "What´s new"
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'''General:''' | '''General:''' | ||
| + | *Run Text miming workflows | ||
| + | |||
*Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms; | *Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms; | ||
| Line 13: | Line 15: | ||
*Indication of progress in time consuming processes. | *Indication of progress in time consuming processes. | ||
| + | |||
| + | *Statistics and reports for all operation and datatypes | ||
| + | |||
| + | *Settings configuration system | ||
| + | |||
| + | *Update System | ||
'''Publication Manager''' | '''Publication Manager''' | ||
| Line 23: | Line 31: | ||
*Publication Labeling and notes | *Publication Labeling and notes | ||
| − | '''Resources''' | + | '''Resources Manager''' |
| − | *Better | + | *Better lexical resources management(dictionaries, lookup tables, etc) |
| − | * | + | *Add Ontologies, rules ageneral lexical words (Stop Words) |
*More loaders and an interface allowing the easy implementation of new loaders | *More loaders and an interface allowing the easy implementation of new loaders | ||
| − | ''' | + | '''Corpora''' |
| − | *Notion of corpus/ corpora added to @Note | + | *Notion of corpus/ corpora added to @Note |
*Allows creating corpus from the publication manager | *Allows creating corpus from the publication manager | ||
| + | *Allows creating corpus from PDF list | ||
*Information extraction processes are-organized over corpora | *Information extraction processes are-organized over corpora | ||
*Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1). | *Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1). | ||
| + | *Manual curation of Relations | ||
| − | '''NER | + | '''NER''' |
| − | * | + | *Add and adapt Linnaeus Tagger algorithm |
| + | *Add ABNER and Chenistry tagger (From Gate8) | ||
*External NERs can be added with an easier interface | *External NERs can be added with an easier interface | ||
| − | |||
| − | |||
| − | |||
'''Relation''' | '''Relation''' | ||
| − | * | + | * Add RE algorithms |
*Supports RE over corpora annotated by any NER Process | *Supports RE over corpora annotated by any NER Process | ||
| + | *Relation Extraction based in Natural Language processing | ||
| + | *Relation Co-occurrence | ||
| + | *Kinetic RE | ||
| + | |||
| + | '''Workflow''' | ||
| + | *Run Biomedical Text Mining workflows | ||
Latest revision as of 14:26, 5 July 2017
Short list of what's new in @ Note2
Summary of features - Anote2 vs Anote
General:
- Run Text miming workflows
- Eliminates dependency on Perl; fully implemented in Java; easier to install and run in different platforms;
- MySql or H2 embedded database are used to store all relevant information (including annotations); data model extended and re-organized to provide the core of the application;
- Organization in a set of plug-ins taking advantage of AI Bench plug-in system; improves modularity; makes easier adding new functionality and alternatives for different processes;
- Code was re-organized using Java interfaces for all relevant concepts and processes, making easier the integration of third party applications; MVC notions from AI Bench are better used to provide organized GUIs; core plug-ins define basic data structures and the interface of basic processes;
- Indication of progress in time consuming processes.
- Statistics and reports for all operation and datatypes
- Settings configuration system
- Update System
Publication Manager
- Add Patent document and Patent search
- Add Springer search
- PDF Retrieval from multiple sources
- Query Update
- Query Management system; larger number of options available
- Possibility of including external publications manually
- Publication Labeling and notes
Resources Manager
- Better lexical resources management(dictionaries, lookup tables, etc)
- Add Ontologies, rules ageneral lexical words (Stop Words)
- More loaders and an interface allowing the easy implementation of new loaders
Corpora
- Notion of corpus/ corpora added to @Note
- Allows creating corpus from the publication manager
- Allows creating corpus from PDF list
- Information extraction processes are-organized over corpora
- Corpus loader: Allows creating corpus from other available corpora (Genia Events, AIMED Protein and @NoteV1).
- Manual curation of Relations
NER
- Add and adapt Linnaeus Tagger algorithm
- Add ABNER and Chenistry tagger (From Gate8)
- External NERs can be added with an easier interface
Relation
- Add RE algorithms
- Supports RE over corpora annotated by any NER Process
- Relation Extraction based in Natural Language processing
- Relation Co-occurrence
- Kinetic RE
Workflow
- Run Biomedical Text Mining workflows
