Difference between revisions of "PubMed Retrieval"
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| − | == About | + | == About PubMed Retrieval Plug-in == |
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| − | + | This plugin was developed in collaboration with the SING group at University of Vigo - Spain. | |
| + | Information Retrieval plug-in divided and two main points: | ||
| + | * Publication searching in PubMed, with the combination of keywords and specific fields. The result is a set of publication what contains information about title, abstract, journal. These publications are organized in queries | ||
| + | * Publication Retrieval that try get PDF file for a Publication indexed for PMID.There are limitation for crawling article (free access only). | ||
| − | + | For structuring this plug-in exist was defined Queries, a publication Set. This publications can be classified in a Query ( Publication Query Relevance ). This step can be important for example in corpus creation or in learning data for automatic classification systems. | |
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| − | + | == User HowTOs == | |
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== MVC AIBench Model: == | == MVC AIBench Model: == | ||
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=== '''''Data-types:''''' === | === '''''Data-types:''''' === | ||
| − | ''''' | + | '''''PublicationManager''''': Plug-in Main Data-type that contains information about all PubMed search already done. Contain information about proxy and database given by configuration file and directory for publications PDF files. |
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| − | ''''' | + | '''''QueryInformationRetrievalExtension''''': Represent a Query. Contain information about database ID, date, keywords, organism, matching publications, available abstracts and other generic query properties. |
| − | ''''' | + | === '''''Operations:''''' === |
| − | ''''' | + | '''''AddFileToPublicationManagerOperation''''': Manually add a PDFfile for publication. |
| − | ''''' | + | '''''AddPublicationToQueryOperation''''': Add a new publication to QueryInformationRetrievalExtension. |
| − | ''''' | + | '''''ExitOperation''''': Publication Manager exit operation. |
| − | ''''' | + | '''''InitReferenceManager''''': Initialize PublicationManager plug-in. |
| − | ''''' | + | '''''JournalRetrivalListDocs''''': Operation that given a list PMID try gets PDF files. |
| − | ''''' | + | '''''PubmedSearchOperation''''': Operation for Search in PubMed given the query details. |
| − | + | '''''SelectRelevance''''': Change document relevance for query. | |
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| − | ''''' | + | '''''UpdateQueryOperation''''': Update QueryInformationRetrievalExtension (updates the result of PubMed search in time). |
| − | ''''' | + | === '''''Views:''''' === |
| − | ''''' | + | '''''PublicationManagerView''''': PublicationManager View that contains a visualizer off all queries presents in Publication Manager and permits have some filters. |
| − | ''''' | + | '''''QueryRelevanceView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query whit your relevance. |
| − | ''''' | + | '''''QueryView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query an permits some search steps. |
Revision as of 15:02, 4 January 2012
Contents
About PubMed Retrieval Plug-in
This plugin was developed in collaboration with the SING group at University of Vigo - Spain.
Information Retrieval plug-in divided and two main points:
- Publication searching in PubMed, with the combination of keywords and specific fields. The result is a set of publication what contains information about title, abstract, journal. These publications are organized in queries
- Publication Retrieval that try get PDF file for a Publication indexed for PMID.There are limitation for crawling article (free access only).
For structuring this plug-in exist was defined Queries, a publication Set. This publications can be classified in a Query ( Publication Query Relevance ). This step can be important for example in corpus creation or in learning data for automatic classification systems.
User HowTOs
MVC AIBench Model:
Data-types:
PublicationManager: Plug-in Main Data-type that contains information about all PubMed search already done. Contain information about proxy and database given by configuration file and directory for publications PDF files.
QueryInformationRetrievalExtension: Represent a Query. Contain information about database ID, date, keywords, organism, matching publications, available abstracts and other generic query properties.
Operations:
AddFileToPublicationManagerOperation: Manually add a PDFfile for publication.
AddPublicationToQueryOperation: Add a new publication to QueryInformationRetrievalExtension.
ExitOperation: Publication Manager exit operation.
InitReferenceManager: Initialize PublicationManager plug-in.
JournalRetrivalListDocs: Operation that given a list PMID try gets PDF files.
PubmedSearchOperation: Operation for Search in PubMed given the query details.
SelectRelevance: Change document relevance for query.
UpdateQueryOperation: Update QueryInformationRetrievalExtension (updates the result of PubMed search in time).
Views:
PublicationManagerView: PublicationManager View that contains a visualizer off all queries presents in Publication Manager and permits have some filters.
QueryRelevanceView: QueryInformationRetrievalExtension View that permits viewing documents in a query whit your relevance.
QueryView: QueryInformationRetrievalExtension View that permits viewing documents in a query an permits some search steps.
