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== Introduction == | == Introduction == | ||
| − | '''@Note is a Biomedical Text Mining platform | + | '''@Note is a Biomedical Text Mining platform that copes with major Information Retrieval and Information Extraction tasks and promotes multi-disciplinary research. In fact, it aims to provide support to three different usage roles: biologists, text miners and application developers'''. |
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Regarding operations, '''@Note sustains the general workflow of BioTM''', fully covering all activities performed in manual curation. The workbench supports the retrieval, processing and annotation of documents as well as their analysis at different levels. | Regarding operations, '''@Note sustains the general workflow of BioTM''', fully covering all activities performed in manual curation. The workbench supports the retrieval, processing and annotation of documents as well as their analysis at different levels. | ||
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== Institutions == | == Institutions == | ||
Revision as of 12:52, 26 March 2012
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SOURCEFORGE NOW AVAILABLE: - All the code is now available at sourceforge.
- Go to the @Note2 Sourceforge Project.
- You can also subscribe the RSS Feed to keep track of all the changes, releases and news !
@Note2 is now published. Please cite using:
- Isabel Rocha , Paulo Maia , Pedro Evangelista , Paulo Vilaça , Simão Soares , José P Pinto , Jens Nielsen , Kiran R Patil , Eugénio C Ferreira and Miguel Rocha.
OptFlux: an open-source software platform for in silico metabolic engineering. BMC Systems Biology 2010, 4:45
Introduction
@Note is a Biomedical Text Mining platform that copes with major Information Retrieval and Information Extraction tasks and promotes multi-disciplinary research. In fact, it aims to provide support to three different usage roles: biologists, text miners and application developers.
The major guidelines of its development were interoperability, extensibility and user-friendly interface. The workbench is meant for both BioTM research and curation. On one hand, it supports regular curation activities, providing an intuitive Graphical User Interface (GUI) interface that does not require any knowledge about workbench or technique implementation. On the other hand, it is also meant for people with programming skills that might wish to extend the workbench capabilities.
@Note is implemented over AIBench, a JAVA framework meant to ease the development of Artificial Intelligence and Data Analysis applications. The main strengths of AIBench are its clear design and available services. Its design is problem-independent, minimum framework-related code is required in order to produce new functionalities. Moreover, it generates GUI code and enforces well-designed MVC code, supporting three main artifacts: operations, data types and views. Operations and data types are used in problem modelling while views display data in a "friendly" way.
Regarding operations, @Note sustains the general workflow of BioTM, fully covering all activities performed in manual curation. The workbench supports the retrieval, processing and annotation of documents as well as their analysis at different levels.
Institutions
University of Minho
University of Minho
IBB-CEB
IBB - Institute for Biotechnology and Bioengineering Centre of Biological Engineering
CCTC
CCTC - Computer Science and Technology Center
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License
Copyright 2012
CCTC - Computer Science and Technology Center
IBB-CEB - Institute for Biotechnology and Bioengineering - Centre of Biological Engineering
University of Minho
This is free software: you can redistribute it and/or modify
it under the terms of the GNU Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This code is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Public License for more details.
You should have received a copy of the GNU Public License
along with this code. If not, see http://www.gnu.org/licenses/
Created inside the Bisbii Research Group (http://sysbio.di.uminho.pt/bisbii)
