Difference between revisions of "Main Page"

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[http://cctc.uminho.pt CCTC - Computer Science and Technology Center]<br>
 
[http://cctc.uminho.pt CCTC - Computer Science and Technology Center]<br>
 
[http://www.ceb.uminho.pt/ IBB-CEB - Institute for Biotechnology and  Bioengineering - Centre of Biological Engineering]<br>
 
[http://www.ceb.uminho.pt/ IBB-CEB - Institute for Biotechnology and  Bioengineering - Centre of Biological Engineering]<br>
[http://www.uminho.pt/ University of Minho]
+
[http://www.uminho.pt/ University of Minho]<br>
 +
[http://www.silicolife.com/ SilicoLife Lda.]<br>
 
<br>
 
<br>
 
<br>This is free software: you can redistribute it and/or modify
 
<br>This is free software: you can redistribute it and/or modify
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<br>along with this code.  If not, see [http://www.gnu.org/licenses/ http://www.gnu.org/licenses/]
 
<br>along with this code.  If not, see [http://www.gnu.org/licenses/ http://www.gnu.org/licenses/]
 
<br>
 
<br>
<br><font color="#FF7800">Created inside the Bisbii Research Group [http://sysbio.di.uminho.pt/bisbii (http://sysbio.di.uminho.pt/bisbii)]
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<br><font color="#FF7800">Created inside the BISBII Research Group [http://sysbio.di.uminho.pt/bisbii (http://sysbio.di.uminho.pt/bisbii)]
 +
<br>Supported by SilicoLife Lda. [http://www.silicolife.com (http://www.silicolife.com)]
 
</font>
 
</font>
  

Revision as of 10:31, 29 November 2012


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  • @Note2 Alpha 0.8.9 is now available (October, 2nd - 2012)!
  • RELEASE NOTE: This is a alpha release candidate version.
  • RELEASE NOTE: Curator RE
  • RELEASE NOTE: New Relation Extration Model for biomedical verbs
  • RELEASE NOTE: NER Algorithm Update
  • RELEASE NOTE: UTF-8 Ready

SOURCEFORGE NOW AVAILABLE: - All the code is now available at sourceforge.

@Note is now published. Please cite using:

  • Anália Lourenço , Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña , Florentino Fdez-Riverola , Eugénio C Ferreira , Isabel Rocha and Miguel Rocha.

@Note: A workbench for Biomedical Text Mining. Journal of Biomedical Informatics 2009, 42 710-720

Introduction

@Note is a Biomedical Text Mining platform that copes with major Information Retrieval and Information Extraction tasks and promotes multi-disciplinary research. In fact, it aims to provide support to three different usage roles: biologists, text miners and application developers.


System view small.png


The major guidelines of its development were interoperability, extensibility and user-friendly interface. The workbench is meant for both BioTM research and curation. On one hand, it supports regular curation activities, providing an intuitive Graphical User Interface (GUI) interface that does not require any knowledge about workbench or technique implementation. On the other hand, it is also meant for people with programming skills that might wish to extend the workbench capabilities.

@Note is implemented over AIBench , a JAVA framework meant to ease the development of Artificial Intelligence and Data Analysis applications. The main strengths of AIBench are its clear design and available services. Its design is problem-independent, minimum framework-related code is required in order to produce new functionalities. Moreover, it generates GUI code and enforces well-designed MVC code, supporting three main artifacts: operations, data types and views. Operations and data types are used in problem modelling while views display data in a "friendly" way.

Regarding operations, @Note sustains the general workflow of BioTM , fully covering all activities performed in manual curation. The workbench supports the retrieval, processing and annotation of documents as well as their analysis at different levels.

Institutions

University of Minho

University of Minho

Uminho.gif 

IBB-CEB

IBB - Institute for Biotechnology and Bioengineering

Centre of Biological Engineering

Logo ibb.png 

CCTC

CCTC - Computer Science and Technology Center

Logo cctc.png

SilicoLife Lda.

SilicoLife Lda.- Computational Biology Solutions for the Life Science

Logo silico.png

Powered By

Aibenchlogo.png www.aibench.org

Mysql.png www.mysql.com/

Gate.png www.gate.ac.uk


License


Copyright 2012
CCTC - Computer Science and Technology Center
IBB-CEB - Institute for Biotechnology and Bioengineering - Centre of Biological Engineering
University of Minho
SilicoLife Lda.


This is free software: you can redistribute it and/or modify
it under the terms of the GNU Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This code is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Public License for more details.

You should have received a copy of the GNU Public License
along with this code. If not, see http://www.gnu.org/licenses/

Created inside the BISBII Research Group (http://sysbio.di.uminho.pt/bisbii)
Supported by SilicoLife Lda. (http://www.silicolife.com)


Gpl.png http://www.gnu.org/licenses/gpl-3.0.html