Corpus Create Annotation Schema By Chemical Tagger

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One of the options for performing NER is the use of the Chemical Tagger NER algorithm (for more details please visit http://gate.ac.uk/sale/tao/splitch21.html#sec:parsers:chemistrytagger ).

Selecting the Corpus object on the clipboard, you should right click over it an choose Corpus -> NER -> Chemical Tagger

Corpus Process NER Chemical Tagger.png

A GUI will be presented, where you can select tagger sources:

  • Ion(e.g. Fe3+, Cl-).
  • Compound formulas (e.g. SO2, H2O, H2SO4 ...).
  • Element names and symbols (e.g. Sodium and Na).
NER ChemicalTagger1.png

Pressing Ok the operation will be launched and a progress window will be shown, indicating the execution of the operation and estimate time left. The NER operation will take a few minutes or hours depending on the number of documents, document size and used resources.

When the process terminates, a new NER Process object will be added to the clipboard and be visualized through the Corpus Process View.