Difference between revisions of "Corpora"

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=== '''''Data-types:''''' ===
 
=== '''''Data-types:''''' ===
  
'''''PublicationManager''''': Plug-in Main Data-type that contains information about all PubMed search already done. Contain information about proxy and database given by configuration file and directory for publications PDF files.
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'''''Corpora''''': Represents Corpora and contains a Corpus Set. Contains methods for Corpus database management.  
  
'''''QueryInformationRetrievalExtension''''': Represent a Query. Contain information about database ID, date, keywords, organism, matching publications, available abstracts and other generic query properties.  
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'''''Corpus''''': Represent a set of publications. Contain information about Corpus properties, name, description, database id and list of IEPRocess applied to corpus.  
  
=== '''''Operations:''''' ===
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'''''NERDocumentAnnotation''''':  Contains information about document entities annotation resulted by NER processes.
  
'''''AddFileToPublicationManagerOperation''''': Manually add a PDFfile for publication.
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'''''REDocumentAnnotation''''': Contains information about document entities and event annotation resulted by RE processes.  
  
'''''AddPublicationToQueryOperation''''': Add a new publication to QueryInformationRetrievalExtension.
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'''''NERProcess''''': Represent a NER Process and contain a set of NERDocumentAnnotation.  
  
'''''ExitOperation''''': Publication Manager exit operation.
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'''''REProcess''''': Represent a RE Process and contain a set of REDocumentAnnotation.
  
'''''InitReferenceManager''''': Initialize PublicationManager plug-in.
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=== '''''Operations:''''' ===
  
'''''JournalRetrivalListDocs''''': Operation that given a list PMID try gets PDF files.
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'''''ChangeClassColor''''': Operation for changing class color. The color serves to view multi-colors.
  
'''''PubmedSearchOperation''''': Operation for Search in PubMed given the query details.
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'''''CreateCorpusOperationByPublicationManager''''': Operation that permits corpus creation deriving for Queries of Publication Manager.
  
'''''SelectRelevance''''': Change document relevance for query.
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'''''ExitOperation''''': Plug-in exit Operation.
  
'''''UpdateQueryOperation''''': Update QueryInformationRetrievalExtension (updates the result of PubMed search in time).
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'''''InitProject''''': Plug-in start operation.  
  
 
=== '''''Views:''''' ===
 
=== '''''Views:''''' ===
  
'''''PublicationManagerView''''': PublicationManager View that contains a visualizer off all queries presents in Publication Manager and permits have some filters.  
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'''''CorporaView''''': Corpora view for Corpus visualization. Permit creation of Corpus data-type on clipboard. 
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'''''CorpusDocumentsView''''': Corpus View for documents viewer.
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'''''CorpusProcessesView''''': Corpus View for processes viewer. Permits the selection off Processes and put it in clipboard.
  
'''''QueryRelevanceView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query whit your relevance.  
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'''''NERAnnotatedDocumentView''''': NERDocumentAnnotation View for document entity annotations visualization.  
  
'''''QueryView''''': QueryInformationRetrievalExtension View that permits viewing documents in a query an permits some search steps.
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'''''NERProcessAnnotationDocumentsView''''': NERProcess View of all document and the creation of NERDocumentAnnotation.
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'''''NerStatisticsView''''': NERProcess View that contains statistics for NERProcess.

Revision as of 15:42, 4 January 2012

About Corpora Plug-in

Central @Note2 plug-in that Define Corpora (Corpus Set) perspective and possibility the integration of extraction processes ( like entity extraction or relation extraction processes). Which Corpus, a set of document, could be composed for processes. Which Corpus Process have Annotation for a document ( entity/event annotations). In this plug-in is already some standard View for Annotated documents.

User HowTOs

MVC AIBench Model:

Data-types:

Corpora: Represents Corpora and contains a Corpus Set. Contains methods for Corpus database management.

Corpus: Represent a set of publications. Contain information about Corpus properties, name, description, database id and list of IEPRocess applied to corpus.

NERDocumentAnnotation: Contains information about document entities annotation resulted by NER processes.

REDocumentAnnotation: Contains information about document entities and event annotation resulted by RE processes.

NERProcess: Represent a NER Process and contain a set of NERDocumentAnnotation.

REProcess: Represent a RE Process and contain a set of REDocumentAnnotation.

Operations:

ChangeClassColor: Operation for changing class color. The color serves to view multi-colors.

CreateCorpusOperationByPublicationManager: Operation that permits corpus creation deriving for Queries of Publication Manager.

ExitOperation: Plug-in exit Operation.

InitProject: Plug-in start operation.

Views:

CorporaView: Corpora view for Corpus visualization. Permit creation of Corpus data-type on clipboard.

CorpusDocumentsView: Corpus View for documents viewer.

CorpusProcessesView: Corpus View for processes viewer. Permits the selection off Processes and put it in clipboard.

NERAnnotatedDocumentView: NERDocumentAnnotation View for document entity annotations visualization.

NERProcessAnnotationDocumentsView: NERProcess View of all document and the creation of NERDocumentAnnotation.

NerStatisticsView: NERProcess View that contains statistics for NERProcess.